Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.
Download, Manipulate, and Present American Community Survey and Decennial Data from the US Census
Finding Cancer Driver Proteins with Enriched Mutations in Post-Translational Modification Sites
Upper Clopper-Pearson Confidence Limits for Burn-in Studies under Additional Available Information
Analyze and correct probe positional bias in microarray data due to RNA degradation
Estimate individual level risk using individual case data and spatially aggregated control data
RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014
Identifying unique multilocus genotypes where genotyping error and missing data may be present
Implementation of the 3D Alpha-Shape for the Reconstruction of 3D Sets from a Point Cloud
Accelerated line search algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form.
This package includes pricing function for selected American call options with underlying assets that generate payouts.
Generates Samples or Complete List of Brazilian IBGE (Instituto Brasileiro De Geografia e Estatistica) Census Households, Geocoding it by Google Maps
Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach
Regression Outlier Detection, Stationary Bootstrap, Testing Weak Stationarity, and Other Tools for Data Analysis
Animal track reconstruction for high frequency 2-dimensional (2D) or 3-dimensional (3D) movement data.
Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.
Annotate microarrays and perform cross-species gene expression analyses using flat file databases.
Generally applicable transcriptome-wide analysis of translational efficiency using anota2seq
Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic Regression" (3rd Ed., 2013)
Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, plotsummary, plothulls, and some slider functions
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types
Tools for Simulating Direct Behavioral Observation Recording Procedures Based on Alternating Renewal Processes
Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Reads 'SPSS' and 'SAS' Files from ASCII Data Files (.txt) and Setup Files (.sps or .sas)
Association Studies for multiple SNPs and multiple traits using Generalized Structured Equation Models
Annotated variants on the chromosome 21, human genome 19, Ashkenazim Trio son sample
A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns
An Adaptive Sum of Powered Correlation Test (aSPC) for Global Association Between Two Random Vectors
Population Assignment using Genetic, Non-Genetic or Integrated Data in a Machine Learning Framework
A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests.
Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)
Sparse Autoencoder for Automatic Learning of Representative Features from Unlabeled Data